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C14. How can I create pygr.NLMSA from UCSC axtNet pairwise alignments?
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Namshin Kim
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1
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2279
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August 13, 2008, 06:52:43 AM
by sarahjenkins
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iCBBE2009 international conference call for paper xm
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junxu123
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0
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878
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August 13, 2008, 12:23:43 AM
by junxu123
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C18. How can I want to download all UCSC genome assemblies all at once?
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Namshin Kim
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1
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1321
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June 23, 2008, 04:45:22 PM
by Namshin Kim
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C13. I have a small set of genomic intervals. How can I store these alignments?
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leec
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2
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1510
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March 26, 2008, 02:43:30 PM
by leec
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pygr.Data resource browser in biodb2
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Namshin Kim
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0
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1172
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January 16, 2008, 04:27:31 PM
by Namshin Kim
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C17. How to save several annotation objects into one NLMSA.
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Namshin Kim
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0
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987
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December 20, 2007, 10:06:48 PM
by Namshin Kim
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C16. Can we share BlastDB over XMLRPC instead of generating our own?
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Namshin Kim
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0
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945
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October 23, 2007, 03:00:55 PM
by Namshin Kim
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C15. Creating NLMSA from text files available at biodb.bioinformatics.ucla.edu?
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Namshin Kim
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1
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1106
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October 17, 2007, 09:14:19 AM
by Namshin Kim
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C18: how can I use the nested list C library?
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leec
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0
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1144
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August 23, 2007, 11:38:18 AM
by leec
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D15: What naming conventions should I follow for adding pygr.Data resources?
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leec
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4
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1643
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July 27, 2007, 05:12:04 PM
by leec
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pygr 0.7 beta 1 now available on SourceForge!
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leec
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0
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1220
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July 18, 2007, 12:13:50 AM
by leec
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0.7 Release Plan
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leec
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1
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1496
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July 10, 2007, 05:54:40 PM
by leec
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F1. How to construct an alignment from my own pairwise alignment intervals?
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leec
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0
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1131
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May 08, 2007, 03:26:47 PM
by leec
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D14. Can I copy an existing pygr.Data resource from one name or layer to another
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leec
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0
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916
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May 08, 2007, 03:24:22 PM
by leec
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D13. How can I get a listing of available pygr.Data resources?
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leec
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0
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1185
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May 08, 2007, 03:21:55 PM
by leec
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D12. I want to access data remotely using pygr, what should I do?
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leec
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0
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878
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May 08, 2007, 03:20:09 PM
by leec
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D10. How can I save pygr.Data schema information?
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leec
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0
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816
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May 08, 2007, 03:13:29 PM
by leec
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D9. What's the best way to register my python objects into pygr.Data?
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leec
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0
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969
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May 08, 2007, 03:02:42 PM
by leec
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D8. How can I store a set of data (database) in pygr.Data?
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leec
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0
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921
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May 08, 2007, 02:58:34 PM
by leec
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C11. I have exon intervals, how can I store these alignments using pygr?
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leec
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0
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883
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May 08, 2007, 02:30:59 PM
by leec
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D5. How can I calculate percent identity for given NLMSA slices?
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Namshin Kim
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0
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944
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April 27, 2007, 03:25:21 PM
by Namshin Kim
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D4. How can I extract splice consensus sequences from NLMSA?
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Namshin Kim
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0
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951
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April 27, 2007, 03:11:11 PM
by Namshin Kim
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D3. How can I run BLAST for my sequence object?
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Namshin Kim
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0
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964
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April 27, 2007, 02:43:42 PM
by Namshin Kim
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D2. How can I make reverse complement from sequence object?
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Namshin Kim
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0
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1267
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April 27, 2007, 02:34:55 PM
by Namshin Kim
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D1. What is the difference between python and pygr coordinate convention for seq
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Namshin Kim
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0
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1115
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April 27, 2007, 02:31:46 PM
by Namshin Kim
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C10. I want to do simple test using NLMSA, is there any public accessible sequen
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Namshin Kim
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0
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842
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April 27, 2007, 02:04:12 PM
by Namshin Kim
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C9. My computer system performance is not good, is it possible to download pre-c
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Namshin Kim
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0
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903
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April 27, 2007, 01:56:35 PM
by Namshin Kim
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C8. I want to create pygr.NLMSA for human hg18, how can I make pygr.NLMSA?
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Namshin Kim
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0
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949
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April 27, 2007, 01:52:27 PM
by Namshin Kim
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C7. How can I make BLAST database (run formatdb command) for my pygr.seqdb?
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Namshin Kim
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0
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1483
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April 27, 2007, 01:08:50 PM
by Namshin Kim
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C6. I have my own fasta sequences, how can I make pygr.seqdb?
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Namshin Kim
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0
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1026
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April 27, 2007, 01:03:51 PM
by Namshin Kim
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C5. I have downloaded genome assembly sequences from UCSC, how can I make pygr.s
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Namshin Kim
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0
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949
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April 27, 2007, 01:00:43 PM
by Namshin Kim
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C4. I have downloaded RefSeq Flat Files, how can I make pygr.seqdb?
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Namshin Kim
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0
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1123
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April 27, 2007, 12:27:11 PM
by Namshin Kim
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C3. I have EST sequences from dbEST, how can I make pygr.seqdb?
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Namshin Kim
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0
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881
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April 27, 2007, 12:23:05 PM
by Namshin Kim
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C2. I have downloaded GenBank Flat Files, how can I make pygr.seqdb?
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Namshin Kim
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0
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834
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April 27, 2007, 12:06:37 PM
by Namshin Kim
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C1. I have protein sequences from Swiss-prot, how can I make pygr.seqdb?
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Namshin Kim
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0
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865
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April 27, 2007, 11:05:01 AM
by Namshin Kim
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B3. I have Linux/Unix computer, how can I install pygr in my Linux/Unix?
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Namshin Kim
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0
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867
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April 27, 2007, 10:45:47 AM
by Namshin Kim
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B2. I have Mac computer, how can I install pygr in my Mac?
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Namshin Kim
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0
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1169
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April 27, 2007, 10:45:12 AM
by Namshin Kim
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B1. I have Windows computer, how can I install pygr in my Windows?
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Namshin Kim
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0
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1162
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April 27, 2007, 10:44:20 AM
by Namshin Kim
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B0. What is the pre-requisite for pygr installation?
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Namshin Kim
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0
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969
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April 27, 2007, 10:41:59 AM
by Namshin Kim
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Windows binary release
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leec
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2
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1292
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April 16, 2007, 02:48:35 PM
by Namshin Kim
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